Streptomyces globosus DK15 and Streptomyces ederensis ST13 as new producers of factumycin and tetrangomycin antibiotics

ABSTRACT Fifty seven soil-borne actinomycete strains were assessed for the antibiotic production. Two of the most active isolates, designed as Streptomyces ST-13 and DK-15 exhibited a broad range of antimicrobial activity and therefore they were selected for HPLC fractionation against the most suppressed bacteria Staphylococcus aureus (ST-13) and Chromobacterium violaceum (DK-15). LC/MS analysis of extracts showed the presence of polyketides factumycin (DK15) and tetrangomycin (ST13). The taxonomic position of the antibiotic-producing actinomycetes was determined using a polyphasic approach. Phenotypic characterization and 16S rRNA gene sequence analysis of the isolates matched those described for members of the genus Streptomyces. DK-15 strain exhibited the highest 16S rRNA gene sequence similarity to Streptomyces globosus DSM-40815 (T) and Streptomyces toxytricini DSM-40178 (T) and ST-13 strain to Streptomyces ederensis DSM-40741 (T) and Streptomyces phaeochromogenes DSM-40073 (T). For the proper identification, MALDI-TOF/MS profile of whole-cell proteins led to the identification of S. globosus DK-15 (accession number: KX527570) and S. ederensis ST13 (accession number: KX527568). To our knowledge, there is no report about the production of these antibiotics by S.globosus and S. ederensis, thus isolates DK15 and ST13 identified as S. globosus DK-15 and S.ederensis ST-13 can be considered as new sources of these unique antibacterial metabolites.

Genome sequence of Streptomyces mangrovisoli MUSC 149T isolated from intertidal sediments

ABSTRACT As the largest genus in Actinobacteria family, Streptomyces species have the ability to synthesize numerous compounds of diverse structures with bioactivities. Streptomyces mangrovisoli MUSC 149T was previously isolated as a novel streptomycete from mangrove forest in east coast of Peninsular Malaysia. The high quality draft genome of MUSC 149T comprises 9,165,825 bp with G + C content of 72.5%. Through bioinformatics analysis, 21 gene clusters identified in the genome were associated with the production of bioactive secondary metabolites. The presence of these biosynthetic gene clusters in MUSC 149T suggests the potential exploitation of the strain for production of medically important compounds.

Draft genome sequence of Streptomyces sp. strain F1, a potential source for glycoside hydrolases isolated from Brazilian soil

ABSTRACT Here, we show the draft genome sequence of Streptomyces sp. F1, a strain isolated from soil with great potential for secretion of hydrolytic enzymes used to deconstruct cellulosic biomass. The draft genome assembly of Streptomyces sp. strain F1 has 69 contigs with a total genome size of 8,142,296 bp and G + C 72.65%. Preliminary genome analysis identified 175 proteins as Carbohydrate-Active Enzymes, being 85 glycoside hydrolases organized in 33 distinct families. This draft genome information provides new insights on the key genes encoding hydrolytic enzymes involved in biomass deconstruction employed by soil bacteria.

Potential for biocontrol of melanized fungi by actinobacteria isolated from intertidal region of Ilha Do Mel, Paraná, Brazil

Abstract Actinobacteria occur in many environments and have the capacity to produce secondary metabolites with antibiotic potential. Identification and taxonomy of actinobacteria that produce antimicrobial substances is essential for the screening of new compounds, and sequencing of the 16S region of ribosomal DNA (rDNA), which is conserved and present in all bacteria, is an important method of identification. Melanized fungi are free-living organisms, which can also be pathogens of clinical importance. This work aimed to evaluate growth inhibition of melanized fungi by actinobacteria and to identify the latter to the species level. In this study, antimicrobial activity of 13 actinobacterial isolates from the genus Streptomyces was evaluated against seven melanized fungi of the genera Exophiala, Cladosporium, and Rhinocladiella. In all tests, all actinobacterial isolates showed inhibitory activity against all isolates of melanized fungi, and only one actinobacterial isolate had less efficient inhibitory activity. The 16S rDNA region of five previously unidentified actinobacterial isolates from Ilha do Mel, Paraná, Brazil, was sequenced; four of the isolates were identified as Streptomyces globisporus subsp. globisporus, and one isolate was identified as Streptomyces aureus. This work highlights the potential of actinobacteria with antifungal activity and their role in the pursuit of novel antimicrobial substances.

Bioprocessing of some agro-industrial residues for endoglucanase production by the new subsp.; Streptomyces albogriseolus subsp. cellulolyticus strain NEAE-J

The use of low cost agro-industrial residues for the production of industrial enzymes is one of the ways to reduce significantly production costs. Cellulase producing actinomycetes were isolated from soil and decayed agricultural wastes. Among them, a potential culture, strain NEAE-J, was selected and identified on the basis of morphological, cultural, physiological and chemotaxonomic properties, together with 16S rDNA sequence. It is proposed that strain NEAE-J should be included in the species Streptomyces albogriseolus as a representative of a novel sub-species, Streptomyces albogriseolus subsp. cellulolyticus strain NEAE-J and sequencing product was deposited in the GenBank database under accession number JN229412. This organism was tested for its ability to produce endoglucanase and release reducing sugars from agro-industrial residues as substrates. Sugarcane bagasse was the most suitable substrate for endoglucanase production. Effects of process variables, namely incubation time, temperature, initial pH and nitrogen source on production of endoglucanase by submerged fermentation using Streptomyces albogriseolus subsp. cellulolyticus have been studied. Accordingly optimum conditions have been determined. Incubation temperature of 30 ºC after 6 days, pH of 6.5, 1% sugarcane bagasse as carbon source and peptone as nitrogen source were found to be the optimum for endoglucanase production. Optimization of the process parameters resulted in about 2.6 fold increase in the endoglucanase activity. Therefore, Streptomyces albogriseolus subsp. cellulolyticus coud be potential microorganism for the intended application.

Optimization of Process Parameters for Improved Production of Bioactive Metabolites by Streptomyces tritolerans DAS 165T.

Aims: To optimize the process parameters for enhanced production of bioactive metabolites by Streptomyces tritolerans DAS 165T. Place and Duration of Study: Department of Botany and Microbiology, April 2012 to August 2012. Methodology: Agar well diffusion assay was employed to study the effect of environmental parameters such as incubation period, pH, temperature and salt concentration and influence of various nutrients such as carbon and nitrogen sources and minerals on the bioactive metabolite production by Streptomyces tritolerans DAS 165T.  Results: The production of antimicrobial metabolite was high when the strain was cultured for six days at 35ºC in medium (pH 7.5) with sucrose at the concentration of 2% (carbon source), soya peptone at the concentration of 1% (nitrogen source) and sodium chloride at the concentration of 5%.  Conclusion: This is the first report on the optimization of bioactive metabolite production by Streptomyces tritolerans DAS 165T. As the strain exhibited potent antimicrobial activity, it may be explored for biotechnological purposes.

Preliminary Study on Some Actinomycetes and Evaluation of Their Potential Antagonism against Fungal Pathogens.

Aims: Control of microbial pathogens by using antagonistic microorganisms is a promising alternative to chemical fungicides. The objective of the present study was to isolate and characterize soil actinomycetes and to their inhibitory activity against some fungal plant pathogens. Place and Duration of Study: National Park “El Chico”, Hidalgo State, and Laboratory of the Southeast Unit of CIATEJ, Yucatán, México, between June 2010 and May 2011. Methodology: Actinomycete species were isolated from six composite soil samples using microbiological standard procedures. All isolates were phenotypically characterized. Antagonistic isolates were selected according to the inhibitory growing of Fusarium sp. and Candida albicans. Afterwards, a new evaluation for the isolates selected was done against Helminthosporium sp., Curvularia sp., and Aspergillus niger. Actinomycetes were identified performing an analysis of the 16S rDNA gene sequence. Results: 164 actinomycete strains were characterized by morphological and biochemical features. Six of them, inhibited the growth of Fusarium sp. and C. albicans from 5 to 10 mm distance in between the actinomycete´s colony growth border of fungal or yeast. A growing reduction from 50 to 83 % in the in vitro antagonism assays was observed for Helminthosporium sp., Curvularia sp., and Aspergillus niger. Results in disc diffusion assays suggested an inhibitory growing capacity of CACIA-1.46HGO for P. capsici, this behavior could be due to the production of diffusible compounds related to secondary metabolism, hydrolytic enzymes, or both of them. Four antagonistic isolates were identified into Streptomyces genus and one as Microbacterium sp. through 16S rDNA gene sequence. Conclusion: Actinomycetes could be potentially a control tool to prevent several fungal commercial plants diseases. However, in situ isolate evaluations are suggested to be investigated.

Nutritional regulation of actinomycin-D production by a new isolate of Streptomyces sindenensis using statistical methods.

Production of actinomycin-D, by an isolate, S. sindenensis, was optimized by statistical methods. Fructose peptone and NaNO3 were found to be critical for antibiotic production. In the second step, their concentrations were optimized with Central Composite Design and Response Surface Methodology. Fructose, peptone and NaNO3 at 2.55, 0.309 and 0.114% respectively gave approximately 261% higher yield (289 mg/l). Cultivation in fermentor at 600 rpm agitation and 1.5 vvm aeration with optimized medium gave 3.56 folds higher yield (365 mg/l) as compared to the yields in shake flasks using normal production medium (80 mg/l).

Taxonomy, identification and biological activities of a novel isolate of Streptomyces tendae

Various isolates of streptomycetes spp. obtained from different localities of Baghdad soils were tested for their antimicrobial activities. Five isolates showed the highest antimicrobial potentialities in the culture broth. The isolate AR1 was the most active one and thus was selected for identification. Morphological, cultural, physiological, biochemical characteristics and biological properties as well as enzymatic activities and cell wall composition suggested that the isolate is belonging to the genus Streptomyces. The 16S ribosomal DNA amplification for phylogenetic study revealed that the isolate was highly related to Streptomyces tendae [99%], so it is designated as Streptomyces tendae AR1. This new strain is capable of producing antimicrobial agent[s], which is active in vitro against Gram+ve and Gram-ve bacteria [Bacillus cereus, Bacillus subtilis, Staphylococcus aureus, Micrococcus luteus. Escherichia coli and Pseudomonas aeruginosa], yeasts [Candida albicans, Candida pseudotropicalis and Rhodotorula minuta] and fungi [Aspergillus flavus, Aspergillus niger, Aspergillus terreus, Botrytis allii, Diplodia oryzae, Fusarium oxysporum, Helmenthosporum turcicum, Machrophomina phaseoli and Trichoderma viride]

A collagenolytic streptomycete.

A soil streptomycete (Streptomyces sp. A11) degraded collagen isolated from bovine Achilles tendon, calf skin, human placenta, carp swim bladder and rat tail tendon and released appreciable quantities of hydroxyproline. It also degraded hide powder and vegetable tanned leather. The organism was taxonomically characterized, compared with allied species, identified and designated as Streptomyces wartii.

Preliminary studies on a Streptomyces sp. CS-14 showing broad spectrum antibiotic activity.

A Streptomyces sp. CS-14 producing antifungal and antibacterial antibiotics has been isolated and characterized. The characterization of mycelial bound antibiotic revealed the presence of a hexaene polyene macrolide whereas filtrate bound antibiotic belonged to aminoglycoside group. Both the antibiotics showed very good antimicrobial activities in vitro.

Thermophilic Streptomyces found in sugarcane environments in Jujuy, Argentina

Se describen cepas de Streptomyces termofilicos aisladas de polvo ambiental, restos de caña de azúcar y cachaza. Todos crecieron a 50-C en 48 h dando micelio aéreo con tonos grises. Los esporos, de 0,8 -1,0 x 1,0-1,4 µm, se tiñieron con verde de malaquita. Los Streptpomyces aislados fueron identificados con los siguientes "Williams' clusters". S.chromofuscus, S. cyaneus, S. microflavus, S. antibioticus, S. basdtedii y S. violaceusniger. Los tres últimos coinciden con las especies encontradas en bagazo de caña de azúcar de otras regiones del mundo